PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 15092 Da PI: 8.0299 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.2e-27 | 47 | 95 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye+ EMT32355 47 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDAEVALVVFSPAGRLYEFV 95 8***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-32 | 38 | 97 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.815 | 38 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.97E-33 | 40 | 99 | No hit | No description |
PRINTS | PR00404 | 4.7E-28 | 40 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-28 | 40 | 113 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-26 | 47 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-28 | 60 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-28 | 75 | 96 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MSEDVGRRRM QQQQQEEEDE SLKAAAAAVE EGGGKTKRKR GRVELRRIED RTSRQVRFSK 60 RRSGLFKKAF ELSVLCDAEV ALVVFSPAGR LYEFVSSDTS VEQLFGRCKD IPDTVIDDLS 120 IAARDSSGYC NIQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-18 | 40 | 98 | 3 | 61 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ512358 | 3e-32 | DQ512358.1 Triticum aestivum MADS-box transcription factor TaAGL42 (AGL42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169632.1 | 1e-91 | MADS-box transcription factor 51-like | ||||
Swissprot | Q9XJ61 | 6e-28 | MAD51_ORYSJ; MADS-box transcription factor 51 | ||||
TrEMBL | M8C4X5 | 2e-90 | M8C4X5_AEGTA; MADS-box transcription factor 56 | ||||
STRING | EMT32355 | 3e-91 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 5e-26 | AGAMOUS-like 14 |
Publications ? help Back to Top | |||
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