PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 24648 Da PI: 5.5529 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 8 | 41 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg+W++eEd l ++v+++G ++W++I r ++ gR EMT32264 8 RGPWSPEEDGTLRRLVERHGARNWTAIGRGVP-GR 41 89******************************.98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.744 | 1 | 50 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-8 | 3 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-9 | 8 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 8 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.99E-8 | 10 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEGCDRIRGP WSPEEDGTLR RLVERHGARN WTAIGRGVPG RLGDLGADGV AEGELEERPC 60 KRASVTPEST SGSGSGSWSD RSDLSHGGAF GLGQVYRPVA RAGGFEPADC AMSQRHEEEE 120 QQQEDPFTSL SLSLPGTDAH GFHHDGSHSH FHQPSLSSSP PPAPASSTAP PTSSYPFSPE 180 FAALMQEMIR DEVRRYISGV NCGANLPSMP QLVDGVMRAA AERAGGVSRT R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162234.1 | 1e-112 | transcription factor MYB44-like | ||||
TrEMBL | M8CD24 | 1e-166 | M8CD24_AEGTA; Transcription factor MYB44 | ||||
STRING | EMT32264 | 1e-167 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 6e-13 | myb domain protein r1 |