PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT32096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 624aa MW: 67149.3 Da PI: 7.0038 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 280 | 336 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g rk + g ++ +++Aa+a++ a++k++g EMT32096 280 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDNEDKAARAYDLAALKYWG 336 78*******************88888885446666.6699989*************98 PP | |||||||
2 | AP2 | 46.9 | 7e-15 | 379 | 430 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g EMT32096 379 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 430 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-8 | 280 | 336 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-14 | 280 | 346 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.82E-17 | 280 | 344 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 281 | 345 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-21 | 281 | 350 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.293 | 281 | 344 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 282 | 293 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 379 | 439 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.36E-24 | 379 | 440 | No hit | No description |
Pfam | PF00847 | 5.9E-10 | 379 | 430 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 380 | 438 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-33 | 380 | 444 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 380 | 438 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 420 | 440 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 624 aa Download sequence Send to blast |
MASGGNWLGF SLSPHMAMEV PSSSEPDHAQ PASASAMSAS PTNAATCNLL FSPPSQMAAP 60 PPGYYYVGGA YGDGPSTAGV YYSHHPVMPI TSDGSLCIME GMMPSSSPKL EDFLGGGNGS 120 AHDAVTYYSH HQQQQQDQQD QEVSRIYQHH QQQLAPYNFQ HLTEAEAIYQ EATAPTDEAM 180 AAAKNLLVTS YGSCYSNAGM QPLSLSMSPR SQSSSCVSAA PQQHQMAAVA AAAAASMVAS 240 QGGSNGGGEQ CVGKKRGTGK GGQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD 300 NSCKKDGQTR KGRQGGYDNE DKAARAYDLA ALKYWGPSTN TNFPLENYRE EVEEMKSMTR 360 QEFVAHLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FTTQEEAAEA 420 YDVAAIKFRG LNAVTNFDIT RYDVDKIMES SSLLPGDEAR KVRPIEAASH VSPMHNGGGE 480 LSHAEEGSSG VWRMVLHGTP QQAAPCTPEV ADLQKGFMDG DPRSSLHGNG IAGFDVESAA 540 HDIDVSGKIN YSNSSSLVTS LSNSREGSPE RFSLPSLYAK HPNAVSLASM SPWMAMPAPT 600 AAHTLRGPNS SIPSMPVFAA WTDA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB458518 | 0.0 | AB458518.1 Triticum aestivum WANT1 mRNA for AP2 transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159300.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-137 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | M8D6N1 | 0.0 | M8D6N1_AEGTA; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | EMT32096 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-109 | AP2 family protein |