PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 197aa MW: 21790.8 Da PI: 7.9016 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3.1e-10 | 127 | 151 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kte C+ + G C+yG+rC+FaHg EMT31981 127 QKTEMCNKWEG-GACSYGGRCRFAHG 151 59*******88.*************9 PP | |||||||
2 | zf-CCCH | 20 | 1.2e-06 | 164 | 190 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p EMT31981 164 YKTLPCQMFAAASGCPYGHRCHFRHSP 190 9************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-13 | 123 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 126 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-8 | 127 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 128 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-10 | 159 | 190 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-7 | 160 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MHLSLLLEEL EADQGKRAIA PAPTPPPKPT EEVAARGGAP KSISIRSKCY LSQAKQPRGE 60 AEAQRLRVRP PPAIEMVKST KPAILDELCC SFEPTQCWQL LDEQAGEDEA KGDGEVVELE 120 AYRQGTQKTE MCNKWEGGAC SYGGRCRFAH GLQEMRPVIR HPRYKTLPCQ MFAAASGCPY 180 GHRCHFRHSP APTAQSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 1e-17 | 128 | 191 | 11 | 75 | Tristetraproline |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118668 | 4e-78 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. | |||
GenBank | AC137267 | 4e-78 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 4e-78 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-78 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199363.1 | 2e-96 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 8e-62 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | M8D6D4 | 1e-143 | M8D6D4_AEGTA; Putative zinc finger CCCH domain-containing protein 21 | ||||
STRING | EMT31981 | 1e-143 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12143 | 32 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-38 | C3H family protein |