PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 408aa MW: 45963 Da PI: 9.4938 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.9 | 2.7e-34 | 96 | 150 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl EMT31949 96 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 150 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.831 | 93 | 153 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-33 | 94 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-18 | 95 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 96 | 151 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-10 | 98 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-10 | 223 | 248 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MEKTNDGSET VRKQSDVQGQ IESSYSCNRQ FLQGLCSHKH TSLLTGTEEM YHHQQQLQSH 60 NQLLASRQTF PSERHLLLQG GIIPGESGLI LSTDAKPRLK WTPELHDRFV EAVNQLGGPD 120 KATPKTIMRL MGVPGLTLYH LKSHLQKYRL SKNLHVQANV GNSRTAVGCT IATEKQSEGN 180 GSPVSHHLNT QTNKRVMKEH VRKIRKFVIN CKSLRQHFLY IPVQRHLQLR IEAQGKYLRS 240 VLEKAHETLA KQNTGSGGLE TAKIQLSELV SKVSTECFHN AFTSFEEIEG SQMLRRQTMQ 300 LGDGSVDSCL TACEGSQKDQ DILSMSLSAQ KGKEIGGMAF DLQMKERGHE DLFLNKLSRR 360 PPNHQEGQER RDSLSMTYQA TKLDLNMNDT NNGTQNSKKF DLNGFSWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-20 | 96 | 152 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-20 | 96 | 152 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-20 | 96 | 152 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-20 | 96 | 152 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366967 | 0.0 | AK366967.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190332.1 | 0.0 | myb-related protein 2-like | ||||
Swissprot | Q9SQQ9 | 2e-86 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | M8CC45 | 0.0 | M8CC45_AEGTA; Myb family transcription factor APL | ||||
STRING | EMT31949 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-86 | G2-like family protein |
Publications ? help Back to Top | |||
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