PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31826
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 284aa    MW: 31120.4 Da    PI: 6.593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07435131
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartm 31
                     +g+W+ eEd+ll++ v+++G g +W + a+t+
         EMT31826  4 KGKWSREEDDLLKKHVEKYGIGrSWQALAETL 35
                     79******************999*****9997 PP
2Myb_DNA-binding31.25e-1094135245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      g++T+ E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w+
         EMT31826  94 GNFTQAEESIICEMYSKRGSC-WSVIAAQLP-GRTDLAVKNYWN 135
                      89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.376151IPR017930Myb domain
SuperFamilySSF466891.83E-19334IPR009057Homeodomain-like
SMARTSM007176.7E-5389IPR001005SANT/Myb domain
PfamPF002491.9E-5433IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-18537IPR009057Homeodomain-like
CDDcd001671.31E-4633No hitNo description
SuperFamilySSF466891.83E-1967134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-187494IPR009057Homeodomain-like
PROSITE profilePS5129417.37188142IPR017930Myb domain
SMARTSM007173.3E-892140IPR001005SANT/Myb domain
PfamPF002491.5E-894135IPR001005SANT/Myb domain
CDDcd001672.23E-695135No hitNo description
Gene3DG3DSA:1.10.10.604.1E-1995144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMKKGKWSRE EDDLLKKHVE KYGIGRSWQA LAETLVASCT ETTTMLIHTL IVTHHCGYSM  60
ISEDVAHGFA GLQRCGRGCR ARWLNYLRPG LKHGNFTQAE ESIICEMYSK RGSCWSVIAA  120
QLPGRTDLAV KNYWNGTISK RFHWASSAAA ARRRRGVHRP SSSTTSDATK PEELALVVHG  180
EGSSTTGSSC YAGGFVDAWI LAGSLPLVQA QPPLAAGGWN AAKEEVGETV PIERKPAVAP  240
APLPENDMVC APMTVIPLAS MEPDDMPWID GFDEIDSFLP WFDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-18214225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180097.11e-179transcription factor MYB23-like
TrEMBLM8D6230.0M8D623_AEGTA; Transcription factor RAX3
STRINGEMT318260.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-35myb domain protein 87