PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT31742

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 281aa MW: 30816.6 Da PI: 8.128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31742	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ +F+++ + H+++H EMT31742 249 YRCSICNLTFNSSQAFGGHMSSH 271 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.58E-5	245	275	No hit	No description
SMART	SM00355	0.0064	249	271	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	8.2E-8	249	273	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.972	249	276	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	251	271	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDPNGSYPNK VRSSESEAKI SPLHDAPRGR AIMPMLSDFV PLNSTPSDST WVWNTPPTID 60 APHVVTMPSI KDCSIMPYQT SVSLSSLPPQ LPDAKFTPST RVNTLPSLPN HREIFENPLE 120 IFSHQDFLSN PIRNYFSSSD QRRIFSMESP SITSLLQGDP IAVVNAHLNT IGAIDDGPIF 180 EIPTRSVYKG PQNIPHGTLT RDASYVVPTP FGPFATSSHD PREDKTPMGV PNGITNSGIV 240 HTTTSSRKYR CSICNLTFNS SQAFGGHMSS HSKARKNKLQ S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231926.2	2e-74	uncharacterized protein LOC104582794
TrEMBL	A0A3B6GPN0	0.0	A0A3B6GPN0_WHEAT; Uncharacterized protein
TrEMBL	A0A453E815	0.0	A0A453E815_AEGTS; Uncharacterized protein
TrEMBL	M8CVS5	0.0	M8CVS5_AEGTA; Uncharacterized protein
STRING	EMT31742	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11492	6	12