PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 341aa    MW: 37441.1 Da    PI: 7.0855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31736genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-1542112148
                      TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd llvd++ ++G g                       +  ++++++g++Rt+k+c++rw++yl
         EMT31736  42 RGPWTAEEDMLLVDYISKHGEGrwnslarcaahysprsllkfffaNLGLVSARVGLRRTGKSCRLRWLNYL 112
                      89********************999999999999999999999999999999999**************97 PP

2Myb_DNA-binding53.36.2e-17118161146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
         EMT31736 118 RGNITPEEQLLILDLHSRWGNR-WSKIAQRLP-GRTDNEVKNYWRT 161
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.82437112IPR017877Myb-like domain
SuperFamilySSF466897.08E-2839159IPR009057Homeodomain-like
SMARTSM007175.8E-1341114IPR001005SANT/Myb domain
PfamPF002494.6E-1342112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2243119IPR009057Homeodomain-like
CDDcd001674.70E-1044112No hitNo description
PROSITE profilePS5129423.354113167IPR017930Myb domain
SMARTSM007177.1E-15117165IPR001005SANT/Myb domain
PfamPF002492.2E-15118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23120166IPR009057Homeodomain-like
CDDcd001678.24E-12122161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDKEYYKACM GMEALPMSPA GLSAGATMAA ATASEDEGDL KRGPWTAEED MLLVDYISKH  60
GEGRWNSLAR CAAHYSPRSL LKFFFANLGL VSARVGLRRT GKSCRLRWLN YLRPDVRRGN  120
ITPEEQLLIL DLHSRWGNRW SKIAQRLPGR TDNEVKNYWR TRVQKHAKQL HCDVNSDRFR  180
DVVRQVWMPR LLERIQAESS SSAAAAAGVG VPALTRAMSS PAGASQYHCF DHASSGEPSR  240
KVAVTMSPDT SSTLRSSLSP AETSHGAHFP AWGAATTTAN VDGSMMQCAG PEAGAIGGDH  300
YVIHGDSLSG SWSELLAATD IPDFEFGNFD DNLWSLEDIY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24391654106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5872670.0EF587267.1 Triticum aestivum R2R3 Myb-like protein (PIMP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164818.10.0transcription factor MYB30-like
SwissprotQ10MB48e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM8D5S90.0M8D5S9_AEGTA; Myb-related protein 305
STRINGEMT317360.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-72myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]