PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 37441.1 Da PI: 7.0855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 42 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd llvd++ ++G g + ++++++g++Rt+k+c++rw++yl EMT31736 42 RGPWTAEEDMLLVDYISKHGEGrwnslarcaahysprsllkfffaNLGLVSARVGLRRTGKSCRLRWLNYL 112 89********************999999999999999999999999999999999**************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.2e-17 | 118 | 161 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ EMT31736 118 RGNITPEEQLLILDLHSRWGNR-WSKIAQRLP-GRTDNEVKNYWRT 161 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.824 | 37 | 112 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 7.08E-28 | 39 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-13 | 41 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-13 | 42 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 43 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.70E-10 | 44 | 112 | No hit | No description |
PROSITE profile | PS51294 | 23.354 | 113 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-15 | 117 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 118 | 161 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 120 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.24E-12 | 122 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDKEYYKACM GMEALPMSPA GLSAGATMAA ATASEDEGDL KRGPWTAEED MLLVDYISKH 60 GEGRWNSLAR CAAHYSPRSL LKFFFANLGL VSARVGLRRT GKSCRLRWLN YLRPDVRRGN 120 ITPEEQLLIL DLHSRWGNRW SKIAQRLPGR TDNEVKNYWR TRVQKHAKQL HCDVNSDRFR 180 DVVRQVWMPR LLERIQAESS SSAAAAAGVG VPALTRAMSS PAGASQYHCF DHASSGEPSR 240 KVAVTMSPDT SSTLRSSLSP AETSHGAHFP AWGAATTTAN VDGSMMQCAG PEAGAIGGDH 300 YVIHGDSLSG SWSELLAATD IPDFEFGNFD DNLWSLEDIY C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 39 | 165 | 4 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF587267 | 0.0 | EF587267.1 Triticum aestivum R2R3 Myb-like protein (PIMP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164818.1 | 0.0 | transcription factor MYB30-like | ||||
Swissprot | Q10MB4 | 8e-80 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | M8D5S9 | 0.0 | M8D5S9_AEGTA; Myb-related protein 305 | ||||
STRING | EMT31736 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 2e-72 | myb domain protein 108 |
Publications ? help Back to Top | |||
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