PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31621
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 152aa    MW: 16186 Da    PI: 8.4727
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31621genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.51.2e-202862135
      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
              C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  EMT31621 28 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 62
              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-202279IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.3912258IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-142363No hitNo description
Gene3DG3DSA:3.30.50.101.3E-172662IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.00E-142759No hitNo description
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PfamPF003202.6E-182862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPSCNGRQDI GPARADQSNA GAASARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRYKKE  60
ERRAAAAAVA PTALASDSGI EYAYGYARHH QQQQQQQQWG CYGPAVAKAA SYGMFGDAAA  120
EDGPCLPWGL GVMPSSPAFG SVREMTSLFQ YY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-153HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.11e-107GATA transcription factor 20-like
TrEMBLM8D5H51e-108M8D5H5_AEGTA; GATA transcription factor 21
STRINGEMT316211e-108(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-23GATA transcription factor 19