PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31486
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8605.11 Da    PI: 10.3968
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31486genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.8e-261261251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              rien   rqvtfskRr g++KKAeELS+LCdaev + +fs tgkl+ ++s
  EMT31486 12 RIENLAARQVTFSKRRRGLFKKAEELSILCDAEVGLAVFSATGKLFQFAS 61
              8**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.039363IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-32362IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-25525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-25565IPR002100Transcription factor, MADS-box
PfamPF003194.8E-251259IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-254061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLAVF SATGKLFQFA  60
SSRLETCVCD KIKLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18565363MEF2C
5f28_B8e-18565363MEF2C
5f28_C8e-18565363MEF2C
5f28_D8e-18565363MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028961e-100AM502896.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM28A (WM28A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161640.12e-36MADS-box transcription factor 47-like
SwissprotQ5K4R09e-35MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLM8D5661e-45M8D566_AEGTA; MADS-box transcription factor 47
STRINGEMT314862e-46(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-28AGAMOUS-like 24
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]