PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31390
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 989aa    MW: 108973 Da    PI: 6.3847
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31390genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.9e-21162249183
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
               f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F 
  EMT31390 162 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 249
               89*********************999*****9555555.49**********************************************96 PP
2Auxin_resp113.51.9e-37309391183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
    EMT31390 309 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 391
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40153312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-36155297IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-19161261No hitNo description
PROSITE profilePS5086311.265162285IPR003340B3 DNA binding domain
SMARTSM010193.2E-18162260IPR003340B3 DNA binding domain
PfamPF023628.7E-19162249IPR003340B3 DNA binding domain
PfamPF065073.0E-33309391IPR010525Auxin response factor
PfamPF023096.3E-10882972IPR033389AUX/IAA domain
PROSITE profilePS5174525.301885969IPR000270PB1 domain
SuperFamilySSF542777.36E-9902964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0007155Biological Processcell adhesion
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009741Biological Processresponse to brassinosteroid
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009909Biological Processregulation of flower development
GO:0009942Biological Processlongitudinal axis specification
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010073Biological Processmeristem maintenance
GO:0010090Biological Processtrichome morphogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0016246Biological ProcessRNA interference
GO:0031048Biological Processchromatin silencing by small RNA
GO:0045010Biological Processactin nucleation
GO:0048439Biological Processflower morphogenesis
GO:0048481Biological Processplant ovule development
GO:0048527Biological Processlateral root development
GO:0048765Biological Processroot hair cell differentiation
GO:0051567Biological Processhistone H3-K9 methylation
GO:0071555Biological Processcell wall organization
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MAAASQEKQQ QLLPTFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR  60
GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ VHNITMHVRL LGSSSGSGVG  120
ADKDTDEVYA QMTLQPVNSE TDVFPIPSLG SYAKSKHPAE YFCKNLTASD TSTHGGFSVP  180
RRAAEKLFPQ LDYSMQPPNQ ELIVRDLHDN MWTFRHIYRG QPKRHLLTTG WSLFVGAKRL  240
KAGDSVLFIR FPLGEFVRVE RPFLTKVTGF RDEKSQLLVG VRRATNQQTA LSSSVLSTDS  300
MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVVPVARYN KANYIQQSVG MRMAMMFETE  360
ESSKRRYTGT IVGVSDSDPM RWPNSKWRNL QIEWDEHGYG ERLERVSIWD IETPENTIVF  420
PSASLNSKRQ CLPGYGVPGL DIASVNMSPF QRAPGNPYGN LPHMPAVGSE LAMMMFLNQS  480
GQNMGTPLSC HQSSYSSIIQ NVKQNYMPPS TFGHPIGSIK PESMPSNEAQ QQQLHAPKMQ  540
RGDSESCEVQ PAADSVSASE LHVAGREPRN TDKYPSQSIS EQNGKGEPRV KPRRSKKGSS  600
RKTISENSEL SSAPSRICDD QQHVSEAELV SCDTKHVNCG NNEGSSGALT HGDFAGQLQC  660
QQVEQNELVS PPKLESSISP DGGKSVNSFP NQASFSQFFD GLDWMVQPPN YQDSNGIQSV  720
SASENIFSPS ANIGSTINTD TLETFQNSCL SDCFPNSIQD FIGSPDLHSL TFLSPEMQNL  780
DVHHDGSNVP STSNSYVQMS FSEDDSGNHM ESMQRGMNNI SSCSQPQTTE GFNLGMYSKL  840
PSLKESQVLS LPEIHNSSRG TSSCSMDAAE YSIGRSAKPM KPPVRTYTKV QKLGSVGRSI  900
DVTRYRDYRE LRSAIASMFG LQGKLEHPAS SDWKLVYVDY ENDVLLVGDD PWEEFINCVR  960
CIRILSPSEV QQMSENGMQV LNDCIQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02341431390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM8C2870.0M8C287_AEGTA; Auxin response factor
STRINGEMT313900.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]