PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 266aa    MW: 28982.3 Da    PI: 4.8585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31351genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l + v+++ +  +W t +++ g++R++k+c++rw++yl
         EMT31351 14 RGPWSREEDAILRNFVRRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP

2Myb_DNA-binding41.82.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l++ +    G++ W+ Ia++++ gRt++++k++w++
         EMT31351  69 GGFTDEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.538962IPR017930Myb domain
SuperFamilySSF466895.19E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-81364IPR001005SANT/Myb domain
PfamPF002491.0E-111462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-201569IPR009057Homeodomain-like
CDDcd001677.95E-71662No hitNo description
PROSITE profilePS5129419.08163117IPR017930Myb domain
SMARTSM007177.1E-1267115IPR001005SANT/Myb domain
PfamPF002491.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2170116IPR009057Homeodomain-like
CDDcd001672.52E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN  60
YLRPALRHGG FTDEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKSPHGV  120
DQSSLPPPPP AMVNLGAALA TLDDGGELTR ESEQLYAELM GLIEPQSTTR ESTGEVMSSP  180
SSFGTSPTAS SFAAGSSATW PVDVHDTILW PESSGSGTVE FDDPCVAHTF GPASTPDSFQ  240
DLLASSYDEV IATQELLYLG MNWSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141167107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-121AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157086.10.0transcription factor RAX2-like
TrEMBLM8D4V60.0M8D4V6_AEGTA; Transcription factor RAX2
STRINGEMT313510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-63myb domain protein 36