PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 28982.3 Da PI: 4.8585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l + v+++ + +W t +++ g++R++k+c++rw++yl EMT31351 14 RGPWSREEDAILRNFVRRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 41.8 | 2.5e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l++ + G++ W+ Ia++++ gRt++++k++w++ EMT31351 69 GGFTDEEDSLILSLYGDIGSR-WSVIAAKLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.538 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.19E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-11 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.95E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 19.081 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLRPALRHGG FTDEEDSLIL SLYGDIGSRW SVIAAKLPGR TDNDVKNHWN TKLKKSPHGV 120 DQSSLPPPPP AMVNLGAALA TLDDGGELTR ESEQLYAELM GLIEPQSTTR ESTGEVMSSP 180 SSFGTSPTAS SFAAGSSATW PVDVHDTILW PESSGSGTVE FDDPCVAHTF GPASTPDSFQ 240 DLLASSYDEV IATQELLYLG MNWSEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241370 | 1e-121 | AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157086.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | M8D4V6 | 0.0 | M8D4V6_AEGTA; Transcription factor RAX2 | ||||
STRING | EMT31351 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 5e-63 | myb domain protein 36 |