PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 552aa MW: 61439 Da PI: 4.4806 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 423.3 | 2e-129 | 183 | 552 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++lL++cA+a+++ + +aqa+++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ + + +l+a+++++e++P+++f++++aN aI EMT31245 183 KQLLFDCATALAEYNVDEAQAIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGTGIYKALTCKDPP---TLYQLSAMQILFEICPCYRFGFMAANYAI 280 589*****************************************************************9...89999************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 lea +geer+HiiDfdi+qG Q+++L+q + + +++p +lRiTgv+++e++ l+ +g+rL+k+Ae +g++fef++ v ++ d+++ +L+++pgEa EMT31245 281 LEACKGEERMHIIDFDINQGSQYITLMQFMKDDANKPRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGADIGDVTPAMLDCRPGEA 380 ***********************************************9988778889***********************.7999**************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 l+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg EMT31245 381 LVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEG 481 ***************************************************************************************************** PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+er e ++kWr+r+++aGF p p+s+++ +++ll+ + ++ y+ ee++g l +gW +++L+++SaW+ EMT31245 482 PDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGGIRSLLSSYCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 552 *******************************************66.*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.467 | 156 | 533 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-127 | 183 | 552 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MSFVGRVDPS TTYADNIYVH KFGAPNSNFA ARRFGSDTQL FRYGPEPFNS EDYGHMGFPE 60 APSAAFQNSF YNQQASLTPC SDAEKDSPVF SNVSQQNSQS ISDNQSSGLE VEFDDEIRLK 120 LQELEHALLD DGDDILFEIS QAGCISDEWA DPMKDVLLAT SPKESESSIS CAGSNSGEAR 180 TPKQLLFDCA TALAEYNVDE AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG 240 IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG 300 SQYITLMQFM KDDANKPRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA 360 VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRMV KGLQPKLVTL 420 VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE 480 GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGGIRSLL SSYCDRYKFE EDHGGLHFGW 540 GEKTLIVASA WQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-62 | 189 | 551 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-62 | 189 | 551 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-62 | 189 | 551 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249646 | 0.0 | AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172158.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A3B6H328 | 0.0 | A0A3B6H328_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453G7A0 | 0.0 | A0A453G7A0_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8C1W0 | 0.0 | M8C1W0_AEGTA; Uncharacterized protein | ||||
STRING | EMT31245 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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