PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT31234

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

WOX

Protein Properties

Length: 262aa MW: 29313.5 Da PI: 6.1041

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31234	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ EMT31234 90 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	103.2	1.8e-33	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq EMT31234 89 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-17	84	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	86	151	IPR001356	Homeobox domain
SMART	SM00389	5.3E-14	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-18	89	156	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-19	90	150	IPR001356	Homeobox domain
CDD	cd00086	3.06E-13	90	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEWDKAAAAA AAGGEPAEER GEALGYVKVM TDEQMEVLRK QISIYATICE QLVEMHRALT 60 AHQDSIAGMR LGNLYCDPLM VHGGHKITAR QRWTPTQMQL QILESIFDQG NGTPSKQKIK 120 DITAELSQHG QISETNVYNW FQNRRARSKR KQAASSLPSN TESEAEGDED SPTDKKPRSD 180 GSQQQGMAAR AHNPERISEM HRHFDAAERE QVRGPMYGSS NDNGLRPSGG LGQMSFYENV 240 MSNPRIDQFF QYRTGESFDM SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363822	0.0	AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08.
GenBank	AK365419	0.0	AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06.
GenBank	AK365714	0.0	AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-124	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A453FT80	0.0	A0A453FT80_AEGTS; Uncharacterized protein
TrEMBL	M8CAA6	0.0	M8CAA6_AEGTA; WUSCHEL-related homeobox 8
STRING	EMT31234	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-62	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]