PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30968
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 297aa    MW: 32199.9 Da    PI: 5.0494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30968genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091653138
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     +g W++eEd +l+  + ++G g+W++++r  g++R++ 
         EMT30968 16 KGLWSPEEDAKLYSHIIRHGVGCWSSVPRLAGLNRCGQ 53
                     678********************************986 PP
2Myb_DNA-binding40.56.2e-1371112346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++  + +v +++ lG++ W+ Ia++++ gRt++++k++w++
         EMT30968  71 CFSQQGGDHIVALHHILGNR-WSQIASHLP-GRTDNEIKNYWNS 112
                      55666667799*********.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-171166IPR009057Homeodomain-like
PROSITE profilePS5129410.5841163IPR017930Myb domain
SuperFamilySSF466892.3E-2213110IPR009057Homeodomain-like
SMARTSM007170.00161565IPR001005SANT/Myb domain
PfamPF002492.3E-71654IPR001005SANT/Myb domain
PROSITE profilePS5129420.80664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2267118IPR009057Homeodomain-like
SMARTSM007173.6E-968116IPR001005SANT/Myb domain
PfamPF002491.1E-1070112IPR001005SANT/Myb domain
CDDcd001671.40E-880111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRPSSGGVG QPKLRKGLWS PEEDAKLYSH IIRHGVGCWS SVPRLAGLNR CGQSRRPPWI  60
NYLRPDLKRG CFSQQGGDHI VALHHILGNR WSQIASHLPG RTDNEIKNYW NSCIKKKLRQ  120
QGLDPATHKP MAAADKATAA LPDAEDEDRK PLAAAADSSL APKQPAVFDP FPVCADYGAG  180
FTDDLCPANA AALYGQFCGA KEGADEDAGF GPADYSCVLD VPENLGYGES SSNSSNRNYG  240
GEVGSMLDGE VGSVLDGEVL HWAKAEPAFA EMEYEFSLPC QEQSLLPNSE FNLEQYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23101181108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0669460.0KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186839.10.0myb-related protein Hv33-like isoform X1
SwissprotP200271e-156MYB3_HORVU; Myb-related protein Hv33
TrEMBLM8CA250.0M8CA25_AEGTA; Myb-related protein Hv33
STRINGEMT309680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-59myb domain protein 86