PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30898
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 428aa    MW: 48719.5 Da    PI: 8.6636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30898genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.81.9e-48161811128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................................kvkaeekewyfFsk 63 
               + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLp+                                       ++++ekewyf+++
  EMT30898  16 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKFDPWDLPRhrikltdlwlctellnrrretsfcsrlltktfyflneeLASTGEKEWYFYCP 115
               579***************************.89***************5589************************999999988864556899******* PP

       NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
               rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  EMT30898 116 RDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 181
               *******************************966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-181467IPR003441NAC domain
PROSITE profilePS5100552.00516213IPR003441NAC domain
PfamPF023659.1E-2518181IPR003441NAC domain
SuperFamilySSF1019417.19E-35104213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEEIRSDDME KQDEVMLPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKFDPWD  60
LPRHRIKLTD LWLCTELLNR RRETSFCSRL LTKTFYFLNE ELASTGEKEW YFYCPRDRKY  120
RNSTRPNRVT GAGFWKATGT DRPIYSSDGS KCIGLKKSLV FYKGRAAKGV KTDWMMHEFR  180
LPSLTDPSLP QKKPLEKTIP PNDSWAICRI FKKTNATAQR ALSHSWVSPP LPSINGAYIP  240
PHLQTTHRSR HASENTSSAM TNIISSNIQF SSSGYFPSIV SSCQSTLNII DSISRPATSI  300
VLPPSDAEHQ AMSILSAIPL DLPAGMDIAS MVMNASPITL SNMDRSAPMN IEFAQPQQCN  360
NNSNMISRCM VDLPDIGNNI NGTQRSINFP FNNLQVPLSD DWRAAVPWDS LPCTTEASTN  420
YQPTKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-461821517170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171862.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW53e-96NAC94_ARATH; Putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-95FEZ_ARATH; Protein FEZ
TrEMBLM8C9W20.0M8C9W2_AEGTA; Putative NAC domain-containing protein 9
STRINGEMT308980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-98NAC domain containing protein 94
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]