PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30798

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

TALE

Protein Properties

Length: 329aa MW: 35158 Da PI: 7.1178

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30798	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	171	203	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ryp+ +++ LAk++gLt +qV++WF N R + EMT30798 171 LRYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 203 59*****************************88 PP
2	BELL	114.9	4.2e-37	70	141	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kL+++l+eV++rY+qy++q+ v ssFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+ EMT30798 70 ERQELQMKKGKLVNMLDEVEQRYRQYHQQMASVSSSFEAVAGAGSARTYTALALRTISRQFRCLRDAIASQV 141 79********************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-51	1	139	IPR006563	POX domain
Pfam	PF07526	3.7E-49	2	138	IPR006563	POX domain
SMART	SM00389	4.3E-4	112	211	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.722	172	207	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-12	172	214	IPR009057	Homeodomain-like
Pfam	PF05920	5.7E-13	173	203	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	173	213	IPR009057	Homeodomain-like
CDD	cd00086	2.34E-9	173	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MNSKYLRAAQ ELLDEVVSVS KGVDDVDAKA KSAVSVKKKE DSEGLSGGGG EEGASGAKGG 60 APAPEMSTAE RQELQMKKGK LVNMLDEVEQ RYRQYHQQMA SVSSSFEAVA GAGSARTYTA 120 LALRTISRQF RCLRDAIASQ VRAASRALGE DCDAEGLGGG LGGGRGVGSR LRYPKDSDKI 180 MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEETKEH QQQQDGGDDK GRPTGSGPAG 240 GKSSSNADGV DDGTPRSMAR AAVGAGTSEG GGAVQASLLE LAGDHQAHAG FYDEEDKMMA 300 EGNRRNNHKS WLTERSLENC RTTHQPQKC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354639	0.0	AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBank	AK355078	0.0	AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBank	AK366536	0.0	AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBank	AK374345	0.0	AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616922.1	1e-110	BEL1-like homeodomain protein 1
Refseq	XP_015616923.1	1e-110	BEL1-like homeodomain protein 1
Refseq	XP_015616924.1	1e-110	BEL1-like homeodomain protein 1
Refseq	XP_015616925.1	1e-110	BEL1-like homeodomain protein 1
Swissprot	Q9SIW1	1e-61	BLH7_ARATH; BEL1-like homeodomain protein 7
Swissprot	Q9SJ56	3e-60	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	M8C9N0	0.0	M8C9N0_AEGTA; BEL1-like homeodomain protein 1
STRING	EMT30798	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4816	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	2e-51	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]