PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | SRS | ||||||||
Protein Properties | Length: 139aa MW: 14312.7 Da PI: 5.88 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 78.9 | 1.3e-24 | 4 | 57 | 101 | 154 |
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGh fkGiL+d G+++ EMT30490 4 VAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHGFKGILHDVGPSN 57 5688***********************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.8E-21 | 5 | 56 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 3.7E-22 | 7 | 55 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AELAYQTTVS IGGHGFKGIL HDVGPSNAHA 60 QLQAAAGGSG GGGGDYQFRL TGDVSPPSTG AEAGDAGGGN NHNIVVSSAV VMDPYPTPGL 120 YGSFPATTPF FHGHPYQRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241285 | 1e-62 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. | |||
GenBank | AP005314 | 1e-62 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. | |||
GenBank | AP005567 | 1e-62 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. | |||
GenBank | AP014965 | 1e-62 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-62 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192267.1 | 4e-95 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | M8BZP1 | 1e-95 | M8BZP1_AEGTA; Uncharacterized protein | ||||
STRING | EMT30490 | 2e-96 | (Aegilops tauschii) | ||||
STRING | Traes_5BL_06A206038.1 | 1e-94 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18120.1 | 1e-17 | SHI-related sequence 4 |