PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30484
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 182aa    MW: 19196.7 Da    PI: 8.2072
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.8e-20114148135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C+nCgt +TplWR+gp+g+k+LCnaCG++++k+++
  EMT30484 114 CANCGTASTPLWRNGPRGPKSLCNACGIRFKKEER 148
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.864108144IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-18108158IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14110148No hitNo description
Gene3DG3DSA:3.30.50.101.9E-17112148IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.27E-15113145No hitNo description
PfamPF003204.1E-18114148IPR000679Zinc finger, GATA-type
PROSITE patternPS003440114139IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MATSTFSLFF PPLPSSKGQW PVAEETAYSY DDHSTVTTLS PSSPASSASS GYLVDCTLSL  60
GTPSTRQPEL DRTKHGAPPQ AYPSVSAGAE PCYYHQQQGR GGAAGHDQLL DRRCANCGTA  120
STPLWRNGPR GPKSLCNACG IRFKKEERRA AETNAGGGFL ALVVMLVGCS VVCLIGIGMR  180
LV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7222061e-176GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154840.11e-112GATA transcription factor 19-like
SwissprotQ6L5E51e-37GAT15_ORYSJ; GATA transcription factor 15
TrEMBLM8C8661e-131M8C866_AEGTA; Uncharacterized protein
STRINGEMT304841e-132(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-28GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]