PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30439

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRF

Protein Properties

Length: 318aa MW: 34501.6 Da PI: 4.6571

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30439	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.9	1.5e-22	229	269	1	41
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + EMT30439 229 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 269 69***********************************9765 PP
2	QLQ	53.8	5.9e-19	163	198	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k EMT30439 163 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 198 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	162	198	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.8E-12	163	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.018	163	198	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.126	229	273	IPR014977	WRC domain
Pfam	PF08879	1.6E-18	230	267	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAAEGEDKKD ANSVGGGGGG ENTLEAAEEA ILQAVGQEPG QELEGEAEES ADREGNGDDT 60 GKEDSGCKDL VLVEDPVLVE DPEEGFRYKS DVGFFKHGKS DLFIVTLAFL NTDDAQNIRF 120 WVYHCLAVIV VFMYKAELSA ATAALQEEMR ALLASVPEGA GASFTAMQLQ ELEQQSRVYQ 180 YMAARVPVPT HLVFPIWKSV TGASSEGAQN YPTLMGLATL CLDFGKSPEP EPGRCRRTDG 240 KKWRCWRKTI PNEKYCERHM HRGRKRPVQV IVEDDEPDSA SGSKSSSGKV TEGGKKTDNK 300 SSSSKKLAVA APAAVEFT

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249458	0.0	AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153628.1	1e-162	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-122	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	M8C831	0.0	M8C831_AEGTA; Uncharacterized protein
STRING	EMT30439	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-30	growth-regulating factor 5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]