PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30434
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 426aa    MW: 48218.4 Da    PI: 5.1911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30434genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-17350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l  +v+ +G g+W+ + r  g++R++k+c++rw ++l
         EMT30434  3 KGPWTSDEDQRLRTYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 50
                     79******************************************9986 PP
2Myb_DNA-binding48.71.7e-155699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g++++eE+++++++++++G++ W++ a+ +  gRt++++k++w++
         EMT30434 56 KGPFSKEEEQKIIELHALHGNK-WAKMASVLE-GRTDNEIKNFWNT 99
                     79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.894150IPR017930Myb domain
SuperFamilySSF466894.49E-30297IPR009057Homeodomain-like
SMARTSM007171.0E-14252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23457IPR009057Homeodomain-like
CDDcd001675.83E-11550No hitNo description
PfamPF139214.4E-16666No hitNo description
PROSITE profilePS5129425.05751105IPR017930Myb domain
SMARTSM007173.3E-1655103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2458103IPR009057Homeodomain-like
CDDcd001674.51E-125899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKKGPWTSDE DQRLRTYVEA HGEGNWNQVQ RNAGLNRCGK SCRLRWANHL RPNLKKGPFS  60
KEEEQKIIEL HALHGNKWAK MASVLEGRTD NEIKNFWNTR MKRLQKAGLG LYPDGLLSRL  120
ANQEMGSHSP EDSRGKKRQN ELSQGNGLEF DDIIFEKLDY KKQSDNFLTP NFTIQDSLPM  180
NDINYPLKRH ASSGIVSDYG GSPKCEQFSN EIEEASYNDL NSEMSVVSFN NVISNSMPLL  240
DDNFPISGKI LPIKMELPSF QYAAYDTSNN LLCPASTLPE QVHGFGVPTK FEGEFDSELP  300
FPYAYHFIPS TSIFDDNTLE YSSFNELTTY KSPTDSDAIF MDNKHNADIL HDKYFCSDPC  360
ATDVSAEARF FNEDSTHSEY QPNNGPLNAL FYGKFCNDVT LSARDDGHQT LLSSNGVPNT  420
HHLPGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-2731034103C-Myb DNA-Binding Domain
1msf_C1e-2731034103C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7309004e-83EU730900.1 Brachypodium distachyon clone BAC DH003L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185337.10.0transcription factor GAMYB-like
TrEMBLA0A453SF760.0A0A453SF76_AEGTS; Uncharacterized protein
STRINGEMT304340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.16e-58myb domain protein 81