PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT30422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 36640.1 Da PI: 9.5759 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.6e-52 | 17 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lp GfrFhPtdee+++ yL +kv + ++ + +i+evd++k +P +Lpkk+k +ekewyf++++d+ky+tg r+nratk+gyWkatgkdke+++ +l+g EMT30422 17 LPSGFRFHPTDEEIITSYLVPKVLNPTFIA-IAITEVDLNKNDPYELPKKAKMGEKEWYFYCQKDRKYPTGIRTNRATKAGYWKATGKDKEIFHPLPTLIG 116 699**********************99777.78***************99999******************************************999*** PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfykgrap+gekt+Wvmheyrle EMT30422 117 MKKTLVFYKGRAPRGEKTNWVMHEYRLE 144 **************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-57 | 10 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.471 | 17 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-27 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MADHLQVQQQ HQHQLELPSG FRFHPTDEEI ITSYLVPKVL NPTFIAIAIT EVDLNKNDPY 60 ELPKKAKMGE KEWYFYCQKD RKYPTGIRTN RATKAGYWKA TGKDKEIFHP LPTLIGMKKT 120 LVFYKGRAPR GEKTNWVMHE YRLEISKQPA YGPSTAIAKA AAINASSKKE RVVCKIFHKN 180 IGVKKVVTPS YAMHMPMSTG GEQQHGSLNS CTFPPPMDYD ASLSLAPPLF RSEDSSYQLH 240 AARVGLSMTG SLMLPMVNNH HHEMMGGNPM VSYQQQQMMQ MQMQMGAVQC FMVGVEPGSE 300 SSSKVSGEGV DRLSNNVQGN GAATTIGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 4 | 185 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 4 | 185 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 4 | 185 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 4 | 185 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 4 | 185 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 4 | 185 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179085.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 2e-73 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | M8CS47 | 0.0 | M8CS47_AEGTA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | EMT30422 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.1 | 2e-71 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
---|---|---|---|
|