PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT30398

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 355aa MW: 36588.8 Da PI: 8.474

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT30398	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	17	76	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e++++cprC+s ntkfCyynnys+sqPryfCkaCrryWt+GG+lrnvP+Ggg+rk k+s EMT30398 17 PEQKVECPRCKSGNTKFCYYNNYSMSQPRYFCKACRRYWTHGGSLRNVPIGGGCRKPKRS 76 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	15	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MAGEAIAGAE KKPRPKPEQK VECPRCKSGN TKFCYYNNYS MSQPRYFCKA CRRYWTHGGS 60 LRNVPIGGGC RKPKRSGTSD AHKLGVASSP EPTTVVPPST CTGMNFANVL PTFMSVGFEI 120 PSSLSLTAFG SSSSSNTAAM MSPGGTTSFL DVLRGGAGGL LDGSLSQNNG YYYGGPAIGS 180 GNGMLMTPPA ASFGIPVPMQ QHGDLVVGGN GIGAATASIF QGATSEEGDD GTGGVMGLQW 240 QPQVGNGGGG GGVSGGVHHL GTGNNVTMGN SNIHNNNNND SGGDDNNGGS SRDCYWINNG 300 GSNPWQSLLN SSSLMKFLGI VFRSSKGCFT SISSINMSLF GRDSLFQVGL KGVEN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MAGEAIAGAE KKPRPKPEQK VECPRCKSGN TKFCYYNNYS MSQPRYFCKA CRRYWTHGGS  60
LRNVPIGGGC RKPKRSGTSD AHKLGVASSP EPTTVVPPST CTGMNFANVL PTFMSVGFEI  120
PSSLSLTAFG SSSSSNTAAM MSPGGTTSFL DVLRGGAGGL LDGSLSQNNG YYYGGPAIGS  180
GNGMLMTPPA ASFGIPVPMQ QHGDLVVGGN GIGAATASIF QGATSEEGDD GTGGVMGLQW  240
QPQVGNGGGG GGVSGGVHHL GTGNNVTMGN SNIHNNNNND SGGDDNNGGS SRDCYWINNG  300
GSNPWQSLLN SSSLMKFLGI VFRSSKGCFT SISSINMSLF GRDSLFQVGL KGVEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY496057	0.0	AY496057.2 Triticum aestivum Dof DNA-binding protein mRNA, complete cds.
GenBank	KC849701	0.0	KC849701.1 Triticum aestivum cultivar Chinese Spring clone CSPBF01 zf-Dof domain protein (pbf) gene, complete cds.
GenBank	KJ544772	0.0	KJ544772.1 Aegilops tauschii cultivar AS2386 prolamin binding factor gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190796.1	0.0	dof zinc finger protein DOF3.2-like
TrEMBL	M8C8J4	0.0	M8C8J4_AEGTA; Dof zinc finger protein PBF
STRING	EMT30398	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-33	TARGET OF MONOPTEROS 6