PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30260
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 233aa    MW: 25312.4 Da    PI: 6.2797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30260genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-184994148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T eE+e +++++++lG++ W+tIa++++ gRt++++k+ w+++l
         EMT30260 49 RGNFTSEEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 94
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-4526IPR009057Homeodomain-like
PROSITE profilePS500905.181843IPR017877Myb-like domain
SuperFamilySSF466895.47E-221090IPR009057Homeodomain-like
SMARTSM00717251345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-123056IPR009057Homeodomain-like
PROSITE profilePS5129426.4864498IPR017930Myb domain
SMARTSM007175.6E-154896IPR001005SANT/Myb domain
PfamPF002491.1E-154994IPR001005SANT/Myb domain
CDDcd001673.29E-125194No hitNo description
Gene3DG3DSA:1.10.10.604.2E-235795IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVRAPCCEKM GLKRGPWTAE EDMTLAGLLR CGKSCRLRWI NYLRPDIKRG NFTSEEEEAI  60
IQLHAMLGNR WSTIAARLPG RTDNEIKNVW HTHLKKRLES SSKPSGQAAP KRKAKKPAVS  120
ASALEGPTSK PASSPGQSLS MSPGKSLSTS SATDYSMASS LENTGSSSSS EEFQIDDSFW  180
SETLGMSVDN SGSGMEISDT FGVDSASPSS NDEMDFWVTL FMQAGDMQSL SQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121005110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9690510.0JN969051.1 Triticum aestivum MYB73 (MYB73) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169007.11e-166myb-related protein Myb4-like
SwissprotQ6K1S63e-85MYB30_ORYSJ; Transcription factor MYB30
TrEMBLM8BZ541e-170M8BZ54_AEGTA; Myb-related protein Myb4
STRINGEMT302601e-171(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-64myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]