PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29965
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 308aa    MW: 33467.6 Da    PI: 7.1011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29965genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50121401128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lppGfrF+Ptd+e++v+yLk+kv++    ++++i++vdiyk++Pw+Lp k++ +e ew+fFs+rd+ky++g r+nr++ sgyWkatg  k++l++ + +  
  EMT29965  12 LPPGFRFQPTDQEIIVCYLKRKVASAASAVTSIIADVDIYKFDPWELPDKAQFGEGEWFFFSPRDRKYPNGARPNRTAGSGYWKATGPRKPILAAgGARCL 112
               79*************************999999***************99999999**************************************9555669 PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
               g+kk Lvfy+gr+p+g+kt+Wvmheyrl
  EMT29965 113 GVKKALVFYQGRSPRGTKTEWVMHEYRL 140
               **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-596170IPR003441NAC domain
PROSITE profilePS5100559.36912170IPR003441NAC domain
PfamPF023653.9E-2613140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEEGFVFRGC ELPPGFRFQP TDQEIIVCYL KRKVASAASA VTSIIADVDI YKFDPWELPD  60
KAQFGEGEWF FFSPRDRKYP NGARPNRTAG SGYWKATGPR KPILAAGGAR CLGVKKALVF  120
YQGRSPRGTK TEWVMHEYRL LHADAGAATR HKPHDSMRLD DWVLCRVRKK GVAVAPDMDG  180
NPGAPSHAEV QAIDSTTAAA HGAFGDDWAD GGVVQYLMSG GSGQVDGAGT ISGAAGHVHD  240
GARRESAPEV QLASVLENIK RDLSFHAMDD VYFLQSSKRA NCMGGGAGHH TDRDQLSPPK  300
SLSMFEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-641217017165NO APICAL MERISTEM PROTEIN
1ut4_B3e-641217017165NO APICAL MERISTEM PROTEIN
1ut7_A3e-641217017165NO APICAL MERISTEM PROTEIN
1ut7_B3e-641217017165NO APICAL MERISTEM PROTEIN
4dul_A3e-641217017165NAC domain-containing protein 19
4dul_B3e-641217017165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200711.10.0NAC transcription factor 32-like
SwissprotD2SMN44e-73NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLM8BY870.0M8BY87_AEGTA; NAC domain-containing protein 2
STRINGEMT299650.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-66NAC domain containing protein 25
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]