PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bHLH | ||||||||
Protein Properties | Length: 581aa MW: 62786.8 Da PI: 9.1219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.7e-13 | 336 | 411 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq EMT29957 336 VHNMSERRRRDRINEKMRALQELIPNCNkvhdtstlarnleksltraqsdiqCFMVMKIDKASMLEEAIEYLKTLQ 411 5*************************888****************9988887667789*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-16 | 329 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.526 | 332 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.80E-14 | 335 | 415 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 335 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 336 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-15 | 338 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-16 | 392 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MLLRRSEPGN ELEELLWDNG PALRRTASPF PPFSCSAAGT MKAQELAKHP ASATAMAHGH 60 DDDAVPWLQH YPIIGVDDDG SGGDTAPLPQ EYFSTLFPGF SDLPAAVASR DAGAPSTSHA 120 AVVVPPLPEP PAPPKQQQPP PRTTGEGVMN FSFFSRPLQR SLPQASVRPS AAGSKSVESM 180 LLQTNRLRST PLFSEQRTAW LHPPKESPAT ASASRPPAPP VPVRHAAEPA AAFPQRLQPE 240 ARAAALPPRL QPEVRAVALP QRLQSEARAS EMPPPPATAT TSSVCSDNGE RSQLKRSSHQ 300 TLEWSVSQDD EDLDDEAGGL RRSAARSTKR GRTAEVHNMS ERRRRDRINE KMRALQELIP 360 NCNKVHDTST LARNLEKSLT RAQSDIQCFM VMKIDKASML EEAIEYLKTL QLQVQMMSTM 420 GTAGLCMAPM MAMQHMQMPP MAHFHHHHLG AMGFGMGAFD PRLVAGAGAA QFPYPMMPGA 480 PMFGAHAIAS PATCLAVSAV VQSSSLFSIQ ESHEKKALLL LGHVVQHKVI PPHNTTFLCS 540 MGKLLIQALT RSFRLAGVLG NAKAHATTCH ITPAKAQSKN K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 345 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376594 | 0.0 | AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164967.1 | 0.0 | transcription factor APG-like | ||||
TrEMBL | M8CQY4 | 0.0 | M8CQY4_AEGTA; Transcription factor PIF3 | ||||
STRING | EMT29957 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 6e-25 | phytochrome interacting factor 3 |