PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 600aa MW: 63071.4 Da PI: 10.036 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 82 | 126 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ Ed l d+v++ G g+W I r+ + +Rt q+ rw EMT29943 82 KAWSNKEDADLMDGVHKCGEGNWLNILRKYNfdSTRTYVQLSQRW 126 58***************************************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 76 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.636 | 76 | 134 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-11 | 79 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-6 | 80 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.16E-15 | 82 | 131 | No hit | No description |
Pfam | PF00249 | 5.6E-6 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MILIYGPSRE QGSSHRVNSE VPLLNTPNEK IPRVPSDKQL AQSHRLTNGT GPVSNSKQAS 60 HTGLSPDPFD GNGPHKKTKK PKAWSNKEDA DLMDGVHKCG EGNWLNILRK YNFDSTRTYV 120 QLSQRWAVIC RRQGTTKLAK VKSVTTEFDI KATQKAFSMA LDMPMGKPGG FSTLRLGASQ 180 QSAQHPAPVF VAAAPELKCA TSSSSLPLPV PVSAQGQIPL PRVQPAPAQA AASKVSNTSN 240 KSQNSSKKQN AQANPTNAPS SIQAAAIAAA KHIRPRGKGS SKTSTSSKAS TMAGEPGTQP 300 GSAEHPELPN CSAPTPSPPV LITQSIEQVN VVSEVAGVNP PEQSASAHLL EPDRALSTTP 360 VSGPCDNMEM DDDSTFCAVT MEDLFPEDVK QPEMVKQPEI VKQHEMIDPK GEESIDPKDA 420 DMLEFDRFVA QGCLTTDCLD KSKGVKIAPG AQGAIPSQKK QPKQQPTVVK SIPASARAPA 480 TVKKTKTLAS HGATFPSTVT SSGLVGTGNA GVLSKAIYRK SPGPGTTGKQ NRCQEIMAQK 540 QHAMSSNSSA MARNGAPGVG TPARNAAPGV GTPARNAAPG VGIPAKNMFP GDLKLVYESP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372869 | 0.0 | AK372869.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3014J07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186657.1 | 0.0 | mucin-5AC-like isoform X2 | ||||
TrEMBL | M8C7B0 | 0.0 | M8C7B0_AEGTA; Putative Telomeric repeat-binding factor 1 | ||||
STRING | EMT29943 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-12 | MYB_related family protein |