PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34294.9 Da PI: 8.9584 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.3e-50 | 11 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv +yL+kk+ g + ++ +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nrat+sgyWkatgk EMT29234 11 LPPGFRFHPRDDELVLDYLAKKLGGGGgggaaagaA---RvygcpTMVDVDLNKIEPWDLPEIAFIGGKEWYFYSLRDRKYATGQRTNRATESGYWKATGK 108 79**********************999777665542...15555469**************7666789********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r EMT29234 109 DRSISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRK 147 ****99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-58 | 3 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.859 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-25 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MNSLSMVEAR LPPGFRFHPR DDELVLDYLA KKLGGGGGGG AAAGAARVYG CPTMVDVDLN 60 KIEPWDLPEI AFIGGKEWYF YSLRDRKYAT GQRTNRATES GYWKATGKDR SISRKGLLVG 120 MRKTLVFYQG RAPKGKKTEW VMHEFRKEGQ GDLMKLPLKE DWVLCRVFYK TRATVAKPPT 180 GSSYNIDSAA ATSLPPLVDN YIAFDHPGVS TVQNLEGYEQ VPCFSNGPSS HLSSSASMNI 240 PVTAMAPMAG DPEQQHMGKA IKDALSQLTR FEQGNVKREA PAQGGVFAQD GFEYLAESGF 300 LQMWNSLNGF SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-48 | 7 | 170 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM027572 | 0.0 | HM027572.1 Triticum aestivum NAC transcription factor 7 (NAC7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174529.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-86 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M8C4R3 | 0.0 | M8C4R3_AEGTA; NAC domain-containing protein 21/22 | ||||
STRING | EMT29234 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-88 | NAC domain containing protein 1 |