PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT29111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 501aa MW: 55809.9 Da PI: 4.8501 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 6.1e-14 | 306 | 351 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +r+++ g+W+AeIrdps+ ++lg+f +a+eAa+a++a + k++g EMT29111 306 IRRRP-LGKWAAEIRDPSK---GVCVWLGTFNSAKEAARAYDAEAHKIRG 351 68899.8*********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.676 | 301 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 303 | 314 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-6 | 306 | 351 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-23 | 306 | 360 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.5E-24 | 306 | 360 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-26 | 306 | 365 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-16 | 307 | 360 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.2E-6 | 341 | 361 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 501 aa Download sequence Send to blast |
MARLLPHNDY DEVLVAMCGG AILADLKPSM VPWRVIQTML WPEKRRPGRG RCFTRLDGFR 60 VGLGVEDDDV DVKEFKVDIR ESDLDVGRGG VAEEDNGARL SRAIRSPPSR GPSLKLNETR 120 TEMYYTSSTV VLQLDEPGQR VYDSSGTVVL HVPSPNDDCD KVRTTIMCGR ALLADVKVPV 180 VTRKVMEVTV WPEKKKHRRG GGGGRRFTGH SGHRGLELYN EEEDFEADFE KFKADSRDYD 240 LDLGHGGVAE KDDDDEEVEI KPLVAVKRSL SHGINPDDLS TMPTASFDGP SERPAKRKRK 300 NQINVIRRRP LGKWAAEIRD PSKGVCVWLG TFNSAKEAAR AYDAEAHKIR GKKAEVNFPE 360 EPTGSADFAS NQPPVPAMNS AAPIEVPVMD IYSDQGSNSF CCSNLDWEYD TKSLDISSIA 420 PISTIAEGAK SAVVKNNTYN SLVPLFMENN AINFEPWMRY LMDDSVDELI DSLLNFDVPQ 480 DVVGNMDLWS FDDMPICGKF F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 306 | 361 | 18 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192774.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 6e-96 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M8CZ08 | 0.0 | M8CZ08_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT29111 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.3 | 7e-22 | related to AP2 12 |