PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28857
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YC
Protein Properties Length: 408aa    MW: 44514.1 Da    PI: 10.0459
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28857genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.91.1e-131251861677
     NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 
               f + +  +arikki++adedv +i+  +Pvl+s+a elf+ +l  rs+  + ++  +tl+  
  EMT28857 125 FLKMQTRVARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYKITLQSGAKTLNSF 186
               56677889*********************************************999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.12E-13117190IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.6E-21125188IPR009072Histone-fold
PfamPF008083.8E-14133190IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAEVRCPTGC SITRERPNAR SLSKKSSWAN VTAGRINAEL SGSDAGITTR RRKSEEREVA  60
GRGGGYGVVG GRSGNGSSAD HGEESEIGGE LRGVGCRAKG AGHGDVMAGG RAEAAFRLRA  120
GRKRFLKMQT RVARIKKIMQ ADEDVGKIAL AVPVLVSRAL ELFLQDLIDR SYKITLQSGA  180
KTLNSFHLLQ RGTRIWKADE YKKNIGKLLP RLKMYQQMLR KQCVKRYSSF DFLTEIVNKV  240
PDLGGGESCG DERGLPRRRK FSNGSDPENE EPRSSKMPIR SLNTSPRGRG RGRGRGRGRP  300
PTKRKEIGYV QFEDESSMFA EQSEPLPGDE IVPETNRGNE SIPQSSHPLV EAPSAATPAV  360
ISKVEKASTN HQPDLPMPDA IGGIGVGPSS FGHLTVQVDE EEDYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-131331901572Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853TRRRKS
2255259PRRRK
3288297RGRGRGRGRG
4288298RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093050.0BT009305.1 Triticum aestivum clone wlm1.pk0016.f3:fis, full insert mRNA sequence.
GenBankKM0787300.0KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156751.11e-151dr1-associated corepressor-like
TrEMBLM8CN280.0M8CN28_AEGTA; Dr1-associated corepressor
STRINGEMT288570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-35nuclear factor Y, subunit C11