PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 16640 Da PI: 7.9476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 6 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p k++r++lg++ tae+Aa+a+++a++ + g EMT28801 6 KYRGVRQRH-WGSWVSEIRHP---LlKKTRVWLGSYETAEDAARAYDQAAQLMSG 56 8*******9.**********8...3456**********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-28 | 5 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-33 | 6 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-36 | 6 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 6 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 6 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MPKLQKYRGV RQRHWGSWVS EIRHPLLKKT RVWLGSYETA EDAARAYDQA AQLMSGPTAR 60 TNFPSGAPVG GSLSPALRAK VEKCCMPTAK GAEMTGAAMA RGYDARQNKL EDIIKVVDEE 120 EECIEEMIRE LTHYGSMEIV LSPACSSSPA P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 3 | 64 | 2 | 63 | ATERF1 |
3gcc_A | 4e-18 | 3 | 64 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146280.1 | 5e-59 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 3e-39 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | M8CY89 | 1e-108 | M8CY89_AEGTA; Ethylene-responsive transcription factor ERF003 | ||||
STRING | EMT28801 | 1e-109 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-26 | ERF family protein |
Publications ? help Back to Top | |||
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