PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 204aa MW: 22455.4 Da PI: 9.9786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.8e-09 | 67 | 103 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky EMT28631 67 LFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 103 788899******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-10 | 66 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-6 | 66 | 104 | No hit | No description |
TIGRFAMs | TIGR01557 | 1.5E-10 | 66 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-6 | 67 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 67 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSYSRKHSAP SFFLQICLIL FAPRGGDRSC YHQRNPELLR CRLNPASCHN LSTSLELKLG 60 DSFSCRLFLL GLKKYGKGDW RNISRNFVQT RTPTQVASHA QKYFIRLSSG GGKDKRRSSI 120 HDITTVHLDD QPPSPSQSSM ITQSSAPAPS ATTGQFSLPA DTKQHGGANA PYNSPPSYGM 180 GLQDQGLQCG PLHDQLAANR SMLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200804.1 | 1e-95 | transcription factor DIVARICATA-like | ||||
Refseq | XP_020200805.1 | 1e-95 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-33 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M8CXT9 | 1e-149 | M8CXT9_AEGTA; Uncharacterized protein | ||||
STRING | EMT28631 | 1e-150 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-16 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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