PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NF-YC | ||||||||
Protein Properties | Length: 191aa MW: 21764.6 Da PI: 6.2745 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 148.7 | 1.2e-46 | 13 | 116 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ a+e krr l++sdiaaav+rt i+dfl+d EMT28625 13 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVAKEDKRRILQRSDIAAAVARTGIYDFLLDLFTS 113 89******99999************************************************************************************9988 PP NF-YC 99 del 101 +e+ EMT28625 114 EET 116 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.37E-27 | 10 | 107 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.9E-30 | 27 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-18 | 36 | 98 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MIHSGPRKQQ QRQLQQFWAE QRSEIEQATD IKNHPLPPTR IRKIMKADED VRMISAEAPA 60 LFAKACEMFT LEMTMRSWMV AKEDKRRILQ RSDIAAAVAR TGIYDFLLDL FTSEETKQGF 120 LLPRAGQGQQ PMGAQAGAYP YYYAPEQQVA GASMVYGGPS TYVWQEPQVQ EQGHPSSTYV 180 WQEPPQQQEG P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-41 | 21 | 110 | 3 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190889.1 | 1e-131 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 2e-62 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | M8BUC1 | 1e-138 | M8BUC1_AEGTA; Nuclear transcription factor Y subunit C-3 | ||||
STRING | EMT28625 | 1e-139 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-43 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
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