PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 382aa MW: 40926.1 Da PI: 7.1287 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G +W+++++ g+ R++k+c++rw +yl EMT28511 13 RGLWSPEEDEKLLRYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.3e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ EMT28511 66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.905 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.338 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPKTHNLLPA SKNLLHAHGG TGSGSNPSNN LAAGAQFHSP NGNGNGCATP PFTISSPTKA 180 VYDAATVAPP VVAPGLYDVH NPGMLMGQHE RGHQAALAMQ QGYPYVHNNG GGLLMSFRDQ 240 NAAGVHASMD FMNGSSNSSS SMEYAAGMPN GNVFNPGVAA FMDETAAMWA TVVEPGMGAG 300 IEMAHQHRQQ HGLGLEEVVG PPPPPLINGG SSGGKGLDMM DVSSEVYGSV GTTTAFDLEL 360 MESCGLFCGA AGNDMEQLQW DC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 1e-52 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 1e-52 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 1e-52 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-52 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166429.1 | 0.0 | transcription factor MYB26-like | ||||
TrEMBL | M8CXH4 | 0.0 | M8CXH4_AEGTA; Transcription factor MYB86 | ||||
STRING | EMT28511 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 8e-83 | myb domain protein 67 |