PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 382aa    MW: 40926.1 Da    PI: 7.1287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28511genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
         EMT28511 13 RGLWSPEEDEKLLRYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP

2Myb_DNA-binding49.97.3e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
         EMT28511  66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-26463IPR009057Homeodomain-like
PROSITE profilePS5129416.905860IPR017930Myb domain
SuperFamilySSF466895.99E-2810107IPR009057Homeodomain-like
SMARTSM007175.5E-131262IPR001005SANT/Myb domain
PfamPF002496.9E-151360IPR001005SANT/Myb domain
CDDcd001672.29E-111660No hitNo description
PROSITE profilePS5129425.33861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2464116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
CDDcd001671.79E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKNLLHAHGG TGSGSNPSNN LAAGAQFHSP NGNGNGCATP PFTISSPTKA  180
VYDAATVAPP VVAPGLYDVH NPGMLMGQHE RGHQAALAMQ QGYPYVHNNG GGLLMSFRDQ  240
NAAGVHASMD FMNGSSNSSS SMEYAAGMPN GNVFNPGVAA FMDETAAMWA TVVEPGMGAG  300
IEMAHQHRQQ HGLGLEEVVG PPPPPLINGG SSGGKGLDMM DVSSEVYGSV GTTTAFDLEL  360
MESCGLFCGA AGNDMEQLQW DC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040061e-52AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042591e-52AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149631e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-52CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166429.10.0transcription factor MYB26-like
TrEMBLM8CXH40.0M8CXH4_AEGTA; Transcription factor MYB86
STRINGEMT285110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-83myb domain protein 67