PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 381aa MW: 42513.1 Da PI: 8.0447 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 22.3 | 3e-07 | 325 | 347 | 30 | 52 |
G2-like 30 ktilelmkvkgLtlehvkSHLQk 52 k+ +e+m+v gLt+ ++kSHLQ+ EMT28465 325 KQRMEAMGVTGLTIWNIKSHLQM 347 6668999***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00081 | 7.8E-11 | 6 | 23 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
SuperFamily | SSF51735 | 5.15E-42 | 6 | 208 | IPR016040 | NAD(P)-binding domain |
Pfam | PF00106 | 1.5E-35 | 7 | 174 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
CDD | cd05233 | 8.62E-48 | 7 | 208 | No hit | No description |
Gene3D | G3DSA:3.40.50.720 | 1.2E-44 | 7 | 207 | IPR016040 | NAD(P)-binding domain |
PRINTS | PR00081 | 7.8E-11 | 82 | 93 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PROSITE pattern | PS00061 | 0 | 146 | 174 | IPR020904 | Short-chain dehydrogenase/reductase, conserved site |
PRINTS | PR00081 | 7.8E-11 | 159 | 178 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 284 | 347 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015996 | Biological Process | chlorophyll catabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0034256 | Molecular Function | chlorophyll(ide) b reductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVRNDLKK EFGEQHVWGT 60 VCDVREGKDV KALVDFARDK LEYIDIWINN AGSNAYSYKP LVETSDEALI EVITTNTLGL 120 MLCCREAINM MWNQPRGGHI FNIDGAGSDG RPTPRFAAYG ATKRSVVHLT KSLQPGMVTT 180 DLLMSGATTK QAKFFINILA ETPDVVADYL VPNIREIPTN QSMKPTYIRF LTGLKAYSRI 240 FSRIAFGARR NKMMSNGKPT QNSDSSYMSG IPTCCLLRAM QPTRSLLHWT NDLHMIFVEA 300 KFLDETDAVL FNCPNSLEAK PTAVKQRMEA MGVTGLTIWN IKSHLQMATY LLMDDTEMVD 360 TAFSADELQM MEKELMNAIR A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuy_A | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_B | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_C | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_D | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_E | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_F | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_G | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
4iuy_H | 6e-17 | 7 | 216 | 30 | 217 | Short chain dehydrogenase/reductase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for chlorophyll b degradation. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369003 | 0.0 | AK369003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181142.1 | 0.0 | chlorophyll(ide) b reductase NOL, chloroplastic-like | ||||
Swissprot | Q84ST4 | 1e-173 | NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic | ||||
TrEMBL | M8BTV4 | 0.0 | M8BTV4_AEGTA; Granaticin polyketide synthase putative ketoacyl reductase 1 | ||||
STRING | EMT28465 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10938 | 12 | 12 |
Publications ? help Back to Top | |||
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