 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT28394 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
GRAS |
| Protein Properties |
Length: 400aa MW: 42371.8 Da PI: 6.9018 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT28394 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 293.5 | 5.5e-90 | 41 | 399 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
v++L e+A++ ++gd+ a+++Larl+ + a +g+p+ R a+yf+eAL+ l+ ++ +p ++++++++ +l a+k+fsevsP+l+f+hlt+
EMT28394 41 VDQLAEAAKFAEAGDAFGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP----NGETPAPPASTPYDVVLKLGAYKAFSEVSPVLQFAHLTCV 137
689*************************999455566*******************9....45566777778899************************** PP
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
qa+l+ + g+ ++H++Dfdi++G QW++L+q+La+R +++ l++T+++sp+s++ el+ ++e+L++fA+elgv f+f+v+ ++++l++ +L g
EMT28394 138 QAVLDGLRGAGCIHVLDFDIGMGEQWASLMQELAQR-RPATALKVTALVSPASHHPLELQLIHENLSSFAAELGVFFQFTVF---NIDTLDPADLVAIAgG 234
***********************************9.7889****************************************9...999999999955555* PP
GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
+alaV+l + + + ++vL+lvksl +kvvv v++ +d+++ +F++++++a++ + l++s++a +++ +++ k+Er+l++++++++v
EMT28394 235 DALAVHLPVGAAHAA--------AMPAVLRLVKSLGAKVVVSVDRGCDRTELPFAAHLFQAFQSTVFLLESVDAV-GTDPDTAGKIERFLVQPAVEQCVVG 326
*********999997........4566*********************************************988.7888*******************98 PP
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
++++ ++ Wr+ + +aGF+pv+ s++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvSaWr
EMT28394 327 RHRA--SIEKAPLPWRAVFASAGFTPVQASTFAESQAESLLHKVPVRGFRVEKRaPGSLCLYWQRAELVSVSAWR 399
7777..55556699**************************************88478999**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MAGAPAPKLP AFQGHLAPAG GFFPALKPKA GTANDEAAAT VDQLAEAAKF AEAGDAFGAR 60
EILARLNYRL PAAPAAGTPL LRSAFYFKEA LRLALSPNGE TPAPPASTPY DVVLKLGAYK 120
AFSEVSPVLQ FAHLTCVQAV LDGLRGAGCI HVLDFDIGMG EQWASLMQEL AQRRPATALK 180
VTALVSPASH HPLELQLIHE NLSSFAAELG VFFQFTVFNI DTLDPADLVA IAGGDALAVH 240
LPVGAAHAAA MPAVLRLVKS LGAKVVVSVD RGCDRTELPF AAHLFQAFQS TVFLLESVDA 300
VGTDPDTAGK IERFLVQPAV EQCVVGRHRA SIEKAPLPWR AVFASAGFTP VQASTFAESQ 360
AESLLHKVPV RGFRVEKRAP GSLCLYWQRA ELVSVSAWRC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK360819 | 0.0 | AK360819.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1125M24. |
