PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT28257

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 381aa MW: 41304.9 Da PI: 8.0625

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT28257	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.6	6.9e-42	17	177	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......................... 77 pGfrFhPt+eel+ +yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ t + r EMT28257 17 PGFRFHPTEEELLGFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGTAPPSARGstptssppstftatipgiclrrvatg 116 9***********************99.99***********888999**********99888888458999***************** PP NAM 78 ........tksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 t++g+Wkatg+d+++ s+ ++++glkktLvfy+grap+g+ktdWvm+eyrl EMT28257 117 sggartgtTERGFWKATGSDRAIRSTgdPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 177 ***999***********8766778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-24	12	87	IPR003441	NAC domain
PROSITE profile	PS51005	46.369	15	197	IPR003441	NAC domain
Pfam	PF02365	4.9E-21	17	177	IPR003441	NAC domain
SuperFamily	SSF101941	3.66E-25	109	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MAMAVAASTM EVDQDLPGFR FHPTEEELLG FYLSRVALGK KLHFDIIGTL NIYRHDPWDL 60 PGMAKIGERE WYFFVPRDRK AGTAPPSARG STPTSSPPST FTATIPGICL RRVATGSGGA 120 RTGTTERGFW KATGSDRAIR STGDPKRVIG LKKTLVFYQG RAPRGTKTDW VMNEYRLPDT 180 GAAPPSEDTV LCKVYRKATP LKELEQRAFE MEEMKQRPGG NGGAARACPV PAAGDFYLSS 240 SDDVQDNFLI PSSSSSSVAL SGNSSSCDAP RVAKKEADIA TVAVASTSSL PHAANAPFRL 300 QLPAVNPPCG LQLPAANHEM PNMCSLQLPA ASQGVLDLPL QLPAATNHGV FDWLQDPFLT 360 QLRSPWQDQH CLSPYAHLLY Y

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MAMAVAASTM EVDQDLPGFR FHPTEEELLG FYLSRVALGK KLHFDIIGTL NIYRHDPWDL  60
PGMAKIGERE WYFFVPRDRK AGTAPPSARG STPTSSPPST FTATIPGICL RRVATGSGGA  120
RTGTTERGFW KATGSDRAIR STGDPKRVIG LKKTLVFYQG RAPRGTKTDW VMNEYRLPDT  180
GAAPPSEDTV LCKVYRKATP LKELEQRAFE MEEMKQRPGG NGGAARACPV PAAGDFYLSS  240
SDDVQDNFLI PSSSSSSVAL SGNSSSCDAP RVAKKEADIA TVAVASTSSL PHAANAPFRL  300
QLPAVNPPCG LQLPAANHEM PNMCSLQLPA ASQGVLDLPL QLPAATNHGV FDWLQDPFLT  360
QLRSPWQDQH CLSPYAHLLY Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-39	17	199	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-39	17	199	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-39	17	199	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-39	17	199	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-39	17	199	22	170	NAC domain-containing protein 19
3swm_B	6e-39	17	199	22	170	NAC domain-containing protein 19
3swm_C	6e-39	17	199	22	170	NAC domain-containing protein 19
3swm_D	6e-39	17	199	22	170	NAC domain-containing protein 19
3swp_A	6e-39	17	199	22	170	NAC domain-containing protein 19
3swp_B	6e-39	17	199	22	170	NAC domain-containing protein 19
3swp_C	6e-39	17	199	22	170	NAC domain-containing protein 19
3swp_D	6e-39	17	199	22	170	NAC domain-containing protein 19
4dul_A	5e-39	17	199	19	167	NAC domain-containing protein 19
4dul_B	5e-39	17	199	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367376	1e-141	AK367376.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2055P15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190294.1	0.0	NAC domain-containing protein 72-like
Swissprot	Q10S65	1e-136	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M8CLK0	0.0	M8CLK0_AEGTA; Putative NAC domain-containing protein 94
STRING	EMT28257	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-70	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]