PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28179
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 396aa    MW: 43957.1 Da    PI: 9.3188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28179genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.8e-181259249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ie++ +r+vtfskRr+g++K A+ LS L++++v v++ s++gk++ +
  EMT28179 12 PIEDDKQRSVTFSKRRAGLFKSASNLSALTGVKVVVVLESESGKMHAF 59
              69********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-15162IPR002100Transcription factor, MADS-box
CDDcd002662.20E-18377No hitNo description
PRINTSPR004047.0E-9525IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.998763IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-171074IPR002100Transcription factor, MADS-box
PfamPF003196.0E-201359IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MPRREIRLGV CPIEDDKQRS VTFSKRRAGL FKSASNLSAL TGVKVVVVLE SESGKMHAFG  60
TPSVNPIIDA FLSRDPLIEP LADKAGKARI ASLQSKVARL DMENTVLEKR ANLSLQHIKK  120
IQAENPGMVA NNIFSREKDL SLGDLNRLFN DLLRIKEHIR HRMPALHHGH EIRTGGQNVQ  180
QIQLLPRGPS QDHSKTHQAS LQPSSSRRFS PQVLPPVPLP PTPQHIMGRS FHMQVPQMFQ  240
TQPSPLAPRL RSLMQPIPHQ VPQLFQSTPP PPPPTPLLAS LLQLDLDQVH GLPPPPQPKL  300
QEYASPYKTK EPSQNKTIPN SIVENISEAS PRFFSSGGND ISPYAPLDQA LYNEIQGMDS  360
YLGCNSNDVG QYNMGREEWV NAPPESSRGN DDDIDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6DM330.0A0A3B6DM33_WHEAT; Uncharacterized protein
TrEMBLM8C1S70.0M8C1S7_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT281790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-13AGAMOUS-like 62