PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | G2-like | ||||||||
Protein Properties | Length: 479aa MW: 51040.2 Da PI: 7.6198 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.1 | 6.1e-31 | 108 | 161 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ EMT28079 108 PRLRWTPDLHMAFLHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 161 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.56 | 104 | 164 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 104 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-14 | 106 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-22 | 108 | 163 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-9 | 109 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MGEVKEKEAL AAEILEDHRK GSSDDSLPPT GLDLNQGFSE GSDDGGDGDE NYDDDGGSTS 60 EVAGGGRSSS NKNSANHESE SSRGRHDKAE GSGERVPTVR QYNRSKHPRL RWTPDLHMAF 120 LHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKIEHESSH ERAAMSSVFS 180 PMNFHMRRGD HPFHDMFFQR AAGSTLSSRN QEWAFTQHAA AARARAVNDN GPGKGLIHEM 240 IFRKDGKPTS HLFDVRDAAA SSGTTSPSTT TTSQADRRPD GAKMGSMNWI GSSSRPVSKT 300 MSATGLEQGG HAQLPFRWRG AAGSNGCHPN GNTGRTTSSS DPVVTCEAGS PLLLPKQGVP 360 RTPAKATEET SIGAEARKTK TSAAAEENGW APELQLSLSP NAAADTVEKG KKRNSAGQEV 420 SSDKVPLSLS LSLHGGVVDD DDGGGRDGRR LEVATGSSSK KAALGLSTLD LTMSIKALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 109 | 161 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 1e-105 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172017.1 | 0.0 | uncharacterized protein LOC109757605 | ||||
TrEMBL | M8C1H0 | 0.0 | M8C1H0_AEGTA; Putative Myb family transcription factor | ||||
STRING | EMT28079 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-33 | G2-like family protein |