PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 24979.2 Da PI: 8.582 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 3.9e-53 | 16 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 lppG+rFhPtdee+++ yL++k+ + +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+n+atk+gyWk+tgkdke+++ ++ l EMT27961 16 LPPGYRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDVNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNQATKAGYWKTTGKDKEIVNPhcTSML 115 79***************************9.88***************99999*****************************************9878888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrap+gekt+Wvmheyrle EMT27961 116 IGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 145 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-59 | 10 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.84 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-28 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MADHLQVQQQ QQQLELPPGY RFHPTDEEII TSYLAPKILN PAFDATAIGE VDVNKNEPWE 60 LPKKAKMGEN EWYFYCQKDR KYPTGIRTNQ ATKAGYWKTT GKDKEIVNPH CTSMLIGMKK 120 TLVFYKGRAP SGEKTNWVMH EYRLEIGKQS TTGLPTAITN AASINASSKE YVVCRIFHKN 180 TGSGLSSMVS HEDVGTRPGN NDQGNGSGTT THKISSMSMG TDGAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-49 | 4 | 183 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-49 | 4 | 183 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-49 | 4 | 183 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-49 | 4 | 183 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-49 | 4 | 183 | 3 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-49 | 4 | 183 | 3 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819764 | 0.0 | FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191194.1 | 1e-171 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 4e-77 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A453DZZ6 | 1e-170 | A0A453DZZ6_AEGTS; Uncharacterized protein | ||||
STRING | EMT27961 | 1e-171 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 2e-75 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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