PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27957
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 721aa    MW: 80897.3 Da    PI: 6.8246
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27957genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.56.9e-1293537203373
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P++kf++++aN aI 
  EMT27957 353 GLLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICPYFKFGYMAANGAIA 450
               589****************************************************************9...9***************************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ +e+++p+ef++l +   ++++ e+L+++pgEa+
  EMT27957 451 EALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSNEFNIPLEFTPL-SVYATQVTEEMLKIRPGEAV 550
               ***********************************************999999**************************6.77899999************ PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle+++yysa+f+s++a+lpr+s+eri+vE+++l+++ivn++aceg+
  EMT27957 551 AVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETMDYYSAMFESIDANLPRDSKERISVEQHCLAKDIVNIIACEGK 651
               ***************************************************************************************************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               +r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgW++r+L+s+SaW
  EMT27957 652 DRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWNTRKLISASAW 720
               ***************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.034325702IPR005202Transcription factor GRAS
PfamPF035142.4E-126353720IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MRWALGRVLV GAGGVSLTNR LGIRVGSSQF DLLKVSPESI SVLASTDDLH LGDEGVDPAP  60
LLLWRVLLHF VANFILAPRC GRGLLMSSSS IGRLIMIDDP FMLALLEFDT CGCPLSLTRR  120
IDPLRFVENL VRFRKYHSNC HLDAKFTRTV NFSKGKLFKY RLTGANVFCE IPTENNLANS  180
SWQTSPLKLE FSNSPYTPLS TQLECDNLSA LSNTPDNQSS TETISAQSIS PLEADSSYIK  240
AGSIRENIQV RPDPLYATSR HNMQQTLRDI ENVLMAPDAD DATTSTKHEF EDTKPAQLMR  300
QRSRTWSHES RQPLPGVVRP YFASGGYPTA SYEFRPEKRQ RELRDDRQQI VKGLLTKCAE  360
ALSEDRTEEF LKLVQEARGT VSINGEPIQR LGAYLLEGLV ARHGNSGTNI YRALKCREPE  420
SKELLSYMKI LYNICPYFKF GYMAANGAIA EALRSEDNIH IIDFQIAQGT QWITLIQALA  480
ARPGGPPHVR ITGIDDPVSE YARGEGLEIV GNMLTSMSNE FNIPLEFTPL SVYATQVTEE  540
MLKIRPGEAV AVNFTLQLHH TPDESVDVNN PRDGLLRMVK GLSPKVTTLV EQESHTNTTP  600
FLMRFLETMD YYSAMFESID ANLPRDSKER ISVEQHCLAK DIVNIIACEG KDRVERHELL  660
GKWKSRLSMA GFKPYPLSSY VNSVIKKLLA CYSDKYTLEE KDGAMLLGWN TRKLISASAW  720
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-713357203378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191335.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM8CKQ10.0M8CKQ1_AEGTA; Uncharacterized protein
STRINGEMT279570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-179GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]