PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 414aa MW: 45743.3 Da PI: 6.9672 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 101 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEdell+++v+++G + W+ I+++++ R +kqc++rw + EMT27928 101 RGPWTEEEDELLKRLVHEHGEHKWAIISEHLP-PRIGKQCRERWTNQ 146 89******************************.9**********985 PP | |||||||
2 | Myb_DNA-binding | 39 | 1.8e-12 | 157 | 196 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ +d ll+da k G+ W++Iar+++ gR+++ +k++w+ EMT27928 157 WTEADDILLIDAQKARGNF-WSSIARCLP-GRSENAVKNHWN 196 *****************88.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.541 | 96 | 151 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 100 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.59E-28 | 100 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-18 | 100 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 101 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-16 | 103 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 150 | 199 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.015 | 152 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-9 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-9 | 157 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 157 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MASLRDMLLN QELAADEYGR FERYTPSSAH GFSHFQQADS PPTGVPDTGS LVSGFGMPPS 60 TFIMPEGTHT AAGYGAEAVP VEIPVVRRQR SASRNTPASY RGPWTEEEDE LLKRLVHEHG 120 EHKWAIISEH LPPRIGKQCR ERWTNQLRPG IKKEHIWTEA DDILLIDAQK ARGNFWSSIA 180 RCLPGRSENA VKNHWNATRR SLKSKRRFKK TSQQAAPGQF TLLEEYIRDK MMADENVAPP 240 SPSSGLGYDG QVFPNAAAML AVSNPPGMGQ YLHPANAAGS SSQARIMNLS VPLPDLNAAY 300 SGEMLERYYD PASFPTYSNN NLLHHGPEPA FLQMFSAQGR MLAACTNLKL FPLPQHLGGG 360 YYGSETGSSS AGGSSDQDED VVQMASREFQ LDLTGPHWLQ LTRSVHRIDP VPIH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-34 | 101 | 200 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 4e-34 | 101 | 200 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163981.1 | 0.0 | protein rough sheath 2-like | ||||
TrEMBL | M8C1L2 | 0.0 | M8C1L2_AEGTA; Transcription factor MYB98 | ||||
STRING | EMT27928 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 7e-36 | myb domain protein 118 |