PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 253aa MW: 26782.2 Da PI: 9.2604 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 94 | 2.3e-29 | 78 | 242 | 230 | 374 |
GRAS 230 lvkslsPkvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWr 316 ++sl+P +v ++++ + n++ s+l rf+ l+yy+a+f+sl++ lp++s eri +Er lg ei+++ a ++r + + W+ EMT27854 78 HIRSLNPSLVFLIDKVDEGNGGvkgagrcgsaSLLPRFAANLRYYAAVFESLHECLPADSAERIAIERDHLGVEISDAMASLDRRRHDgdraADKVSRGWK 178 68999999999998754444434445555555************************************************9998876511114556788** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdg....yrveeesgslv.lgWkdrpLvsvSaWr 374 erle+aGF+ ++ls+++++qaklll++ + + g +e +g ++ lgW+dr+L+++SaWr EMT27854 179 ERLESAGFEDARLSSRTVSQAKLLLKMKSgGGGggggGGMEAGDGKAMaLGWRDRALITASAWR 242 ***************************9844335555667766766666**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.085 | 1 | 216 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-27 | 78 | 242 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MNLTLSLGVN GGAAAAKKRK VMDGVGDVGV LGAGDGGDRA TVMRLLQARD RMVKVELDHD 60 DGDNVRQSSW DPRSASAHIR SLNPSLVFLI DKVDEGNGGV KGAGRCGSAS LLPRFAANLR 120 YYAAVFESLH ECLPADSAER IAIERDHLGV EISDAMASLD RRRHDGDRAA DKVSRGWKER 180 LESAGFEDAR LSSRTVSQAK LLLKMKSGGG GGGGGGGMEA GDGKAMALGW RDRALITASA 240 WRPCRQSVGK NEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-13 | 65 | 243 | 220 | 380 | Protein SCARECROW |
5b3h_A | 8e-13 | 65 | 243 | 219 | 379 | Protein SCARECROW |
5b3h_D | 8e-13 | 65 | 243 | 219 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173956.1 | 1e-123 | scarecrow-like protein 23 | ||||
TrEMBL | M8C0W4 | 1e-179 | M8C0W4_AEGTA; Uncharacterized protein | ||||
STRING | EMT27854 | 1e-180 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11649 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 6e-16 | SCARECROW-like 21 |