PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 815aa MW: 90796.1 Da PI: 4.7918 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.7 | 1.7e-13 | 73 | 218 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk..................kvkaeekewyfFskrdkkyatgkr 73 lp+G++F+P+d++l+ +L++++ + + +e+ik+ d ++P+d+p ++++ + +yfF+k+ + ++++ EMT27713 73 LPRGVEFNPSDSDLL-WHLAAEMGNGLahrhpfI--SEFIKSGDegarFGCTHPRDMPGllerdaiqlmqtvdvsinGMRQDGHALYFFHKKVNLDNNEND 170 699************.667777665553454331..3345544334448889*****95589999999998888766555567788****99887655333 PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + W+++ +++++ +g l g+k+t+++y + ++++++tdW +h y + EMT27713 171 --K---DISWQKSAPSRSIIL-DGGLRGCKETFALY-AFKNSPRRTDWELHRYYI 218 ..3...335************.999***********.5667779********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-16 | 66 | 236 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.588 | 73 | 236 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-6 | 74 | 217 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MAFDIDSLPP LLGPDSDSDS DSDHLPPAPR RGRPLRPPPA PRVEPSPPAP RRCEATPAPE 60 GTGGAAQQSW PGLPRGVEFN PSDSDLLWHL AAEMGNGLAH RHPFISEFIK SGDEGARFGC 120 THPRDMPGLL ERDAIQLMQT VDVSINGMRQ DGHALYFFHK KVNLDNNEND KDISWQKSAP 180 SRSIILDGGL RGCKETFALY AFKNSPRRTD WELHRYYIKN IMENEGELVL SKVFYKSQKG 240 HCECAAKASL QSAQDNSVTD DDSREEKEDT QLEKLSVNMA TESNGNNQEQ MLVEMYPDQD 300 KPCSLKHVLD TADVNHENQI NDQAETELDH MSLQDRYRIL LADMRSCSAR ASAEKCALND 360 MGNSSMQMDA ETSGPVPKSE IDEMYGSFLA VYVFIPVTLI NFLFCNVGYR NHEGTAYREC 420 SVNGKEIPVE DTEGPVNDKA FNSSAELLLS QTPACGDENV QLAPRNSGTY LVDVKTEPAL 480 DGYAIYPSDS PVKFHHSNND GLKVSGSILE CVPKDAEDSL PSLGVKSELS GYELPGLCEN 540 SFISSMEPIV KKLHTRTLNC NGGLAPCSRQ RKKRDSSEKV LEEDGYKNDE GIPYPSRQKR 600 KKKTATNYVC RDSIETALEE DAPGLLQILL DKGIVVKEIK LYDVVEDDEM LPDCTESDFQ 660 DLENVITKLF PQRTSLLKSV AKHGKGGKAI YCLACLISLI EQSVPIEWQI RRMVTAMKLS 720 SCGRTALIEN RPLLIGEDLS EGEAKVLQEY GWIPNTGLGT LLNYRDRVVH DRWNEKYSTD 780 WRMKIGKLLM NGYSEGELII THVPLNSEEI KSENP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372460 | 0.0 | AK372460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002I07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153314.1 | 0.0 | uncharacterized protein LOC109738630 isoform X1 | ||||
TrEMBL | M8C0Z2 | 0.0 | M8C0Z2_AEGTA; NAC domain-containing protein 8 | ||||
STRING | EMT27713 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7479 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-29 | NAC family protein |