PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27650
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 321aa    MW: 34007.9 Da    PI: 9.5435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27650genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17145191455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  EMT27650 145 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 191
               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-21139208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-18144195No hitNo description
Gene3DG3DSA:4.10.280.105.1E-22145199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEGASSTLS AMGASFCGSN QVQVQGAVSE QGRAGHTTAY GGSGAGSALP SAVGSGNANA  60
GGRGYEATVA SSSGRSNYSF GVTATTATTG TAPTSPSNRS SKRKRGLDTE DSESPSEDAE  120
SESLALERKP PQKLTTARRS RAAEVHNLSE RRRRDRINEK MRALQELIPH CNKTDKASML  180
DEAIEYLKTL QMQVQMMWMG SGMAPPAVMF PGMQMHQYLP QMGPPSMARM PFMAPPQQGH  240
GVSLPEQYAH FLGVNPHHLQ PPAHHHHHQH FAQGVGYYPL GAKALQQSPA LHHVSNGNTG  300
GGTPAATANA TPGNAIHPNK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0854220.0KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181205.10.0transcription factor PIF1-like
TrEMBLM8BRM80.0M8BRM8_AEGTA; Transcription factor PIF3
STRINGEMT276500.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-36phytochrome interacting factor 3