PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 367aa MW: 39715.8 Da PI: 8.0795 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.1e-13 | 112 | 197 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT........................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg........................................tWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++ lG++ +W+ Ia++++ gRt++++k++w++yl EMT27607 112 GMFSREEEETVMSLHATLGNKvhgncpsvllsnhgncscstwqlqlnehgrgsgpwqlrdaRWSQIAQHLP-GRTDNEVKNYWNSYL 197 56899******************************************************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.866 | 10 | 105 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 14 | 33 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0066 | 14 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 74 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-11 | 91 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 100 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.2 | 106 | 201 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-11 | 110 | 199 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-7 | 157 | 197 | No hit | No description |
Pfam | PF00249 | 6.8E-9 | 158 | 197 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.13E-11 | 169 | 198 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 173 | 198 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYPQGAAPQ GAVVAGGGPE APRLHRPLRP 60 QLLEHRPRQG RAFGKGFQQN SVKCTLACGL ERNGKSCRLR WINYLRPGLK HGMFSREEEE 120 TVMSLHATLG NKVHGNCPSV LLSNHGNCSC STWQLQLNEH GRGSGPWQLR DARWSQIAQH 180 LPGRTDNEVK NYWNSYLKKR VEGARSPAKS AGSDAPRSPT PSDSARERST VNQPSIAGSS 240 GPLESSSMAD DSSNLTIPGV VATIRPHTPV LPKVMFADWL DMDMDMDYGT GLMAPSALDA 300 AFDGSPAQLG VGHQGAVQVD GMCGAVDSLH GLGNGGICWE FDAGQIHMQG GGEFCDLLSV 360 SEFLGIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370513 | 0.0 | AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156817.1 | 1e-177 | transcription factor LAF1-like | ||||
TrEMBL | M8CJV4 | 0.0 | M8CJV4_AEGTA; Transcription factor LAF1 | ||||
STRING | EMT27607 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-35 | myb domain protein 19 |