PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT27418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 30925.6 Da PI: 5.0581 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed llv+ v+q+G g+W+++ r g+ R++k+c++rw ++l EMT27418 42 KGPWTTAEDALLVNHVRQHGEGNWNAVQRITGLLRCGKSCRLRWTNHL 89 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l +++++qlG++ W++ a +++ gRt++++k++w++ EMT27418 95 KGAFSPDEELLVAQLHAQLGNK-WARMATHLP-GRTDNEIKNYWNT 138 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.894 | 37 | 89 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 40 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.36E-28 | 41 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-14 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 42 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-11 | 44 | 89 | No hit | No description |
PROSITE profile | PS51294 | 23.366 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 93 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-14 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 95 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.32E-11 | 97 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MDATSLEEEQ VAAAAAAADN LDEEVEQGEE GEEEATPVVL KKGPWTTAED ALLVNHVRQH 60 GEGNWNAVQR ITGLLRCGKS CRLRWTNHLR PNLKKGAFSP DEELLVAQLH AQLGNKWARM 120 ATHLPGRTDN EIKNYWNTRA KRRQRAGLPM YPPEVQLPLA ITKRCRYADF SPPQQSAGGN 180 VLDATDAGFK LHPGGNKSEG ELLKDDDDIG TLFDMIIPKA FPMTEPAPPA MVTNHSGNSI 240 SQHGSDDHNV NLNVDHLPVI SSEQDWVLDG ACQWNNMSGI C |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 40 | 143 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182637.1 | 1e-117 | uncharacterized protein LOC109768314 | ||||
TrEMBL | M8C060 | 0.0 | M8C060_AEGTA; Transcription factor GAMYB | ||||
STRING | EMT27418 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-67 | myb domain protein 101 |