PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT27395

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 399aa MW: 42550 Da PI: 10.7007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT27395	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	26.8	1.3e-08	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F+r snL+ H r+H EMT27395 64 YVCEICNRGFRRASNLQMHRRRH 86 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	56	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-7	62	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0028	64	82	No hit	No description
SMART	SM00355	3.1E-4	64	86	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.822	64	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	44	110	140	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	170	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MSTIATAAPA TNEVEETAEP PSGWLQIAAP SSATKRKCRP AGTPDPDAEV VSLSPRTLLE 60 PKTYVCEICN RGFRRASNLQ MHRRRHGVPW EQLQKREAGK AAPPARKRVF VCPEPSCPHH 120 HPSRALSGAS AVKHHFRRQH GAHRQWSCSR CSRAYAVHGD YKAHLKTCGG SRTRARVLRY 180 PCHCGRVFFR VDKFAYHKQT GRAVPPQAGV PSAPACGASS GPQQQATSPS LSSFASPSSD 240 ILIGAVFRPG AAALRSPTVP TFVGFLPPPD TSRSRHDLEL QLMPPSCPAA PYSPPALISR 300 GDDGAIQLQL TIGLCSTDNR RGEEFRPSSF QAPRGRARWR RAVHLHGGAG GAAAGDGREG 360 GAAATCSPSS PSPSSSTAYG GGGTSLQWAM RSLPSWTAS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MSTIATAAPA TNEVEETAEP PSGWLQIAAP SSATKRKCRP AGTPDPDAEV VSLSPRTLLE  60
PKTYVCEICN RGFRRASNLQ MHRRRHGVPW EQLQKREAGK AAPPARKRVF VCPEPSCPHH  120
HPSRALSGAS AVKHHFRRQH GAHRQWSCSR CSRAYAVHGD YKAHLKTCGG SRTRARVLRY  180
PCHCGRVFFR VDKFAYHKQT GRAVPPQAGV PSAPACGASS GPQQQATSPS LSSFASPSSD  240
ILIGAVFRPG AAALRSPTVP TFVGFLPPPD TSRSRHDLEL QLMPPSCPAA PYSPPALISR  300
GDDGAIQLQL TIGLCSTDNR RGEEFRPSSF QAPRGRARWR RAVHLHGGAG GAAAGDGREG  360
GAAATCSPSS PSPSSSTAYG GGGTSLQWAM RSLPSWTAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148663.1	0.0	protein indeterminate-domain 16-like
Swissprot	F4IPE3	2e-67	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	M8BQW7	0.0	M8BQW7_AEGTA; Zinc finger protein MAGPIE
STRING	EMT27395	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	4e-57	C2H2-like zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]