PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27329
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 238aa    MW: 25975.5 Da    PI: 4.4217
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27329genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.1e-081964247
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
              rie +   +v fs+ r g + KA+ L vL++a+va +  s+ g+ +
  EMT27329 19 RIEQDDAPHVWFSNGRVGFFSKASNLAVLTGAQVAALTSSPGGNAF 64
              79999999*****************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.5351070IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-91069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-131179IPR002100Transcription factor, MADS-box
PfamPF003195.2E-91966IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAALIQRGGS GRKKTVIRRI EQDDAPHVWF SNGRVGFFSK ASNLAVLTGA QVAALTSSPG  60
GNAFSFDHPS VDPVVERFLV GESAGAGASE DGGAGEVQKL EKLHQEFDEL RKVLVEVKKR  120
TEREEATVKE RDTGEPIAAW VDPNVRDMGA EDMAAFFAAL MQVKDIASER ANQVLLRVDV  180
SRMAEEMLLP LLFVVGMDME EMQMVIPQPL GFDDEMGMPP SPEMPAGLET NTGFQFSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185577.12e-82agamous-like MADS-box protein AGL62
TrEMBLM8BZE01e-172M8BZE0_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT273291e-172(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-18M-type_MADS family protein