PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27328
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 258aa    MW: 28104.8 Da    PI: 4.3521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27328genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.24.5e-081964247
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
              rie +   +v fs+   g + KA+ L vL++a+va +  s+ g+ +
  EMT27328 19 RIEQDDAPHVQFSNGHMGFFSKASNLAVLTGAQVAALTSSPGGNAF 64
              89999999*****************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.0161070IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-71069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-121179IPR002100Transcription factor, MADS-box
PfamPF003191.3E-81966IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAPNQRGGS GRKKTVIRRI EQDDAPHVQF SNGHMGFFSK ASNLAVLTGA QVAALTSSPG  60
GNAFSFDHPS VDPVVERFLV GESAGAGASE EVSAGEDQKL EKLHQEFNEL RKELVEVKKR  120
TEREEVTAKL RDAGEPIAAW VDPNVRDMGD EDMAAFFVAL MQVKDIASER ANQVPLHVDV  180
SRIAEQQMVM ELTPAQGVTA GMDMQEMLPP LVFIVGMDME EMQMVIPQPL GFDNEMGMPP  240
SAEMPAGLET NAGFQFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172977.14e-86agamous-like MADS-box protein AGL61
TrEMBLM8BZY60.0M8BZY6_AEGTA; Agamous-like MADS-box protein AGL62
STRINGEMT273280.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-15M-type_MADS family protein